| 1. | 7 | Michael Johnson | 12:47.6 | Yokota Middle | | |
| 3. | 8 | Blake Mori | 12:59.2 | St Marys Middle Internatio... | | |
| 4. | 8 | Cody Hadden | 13:02.4 | American (Middle) School i... | | |
| 5. | 8 | Kenjo Maeji | 13:08.4 | American (Middle) School i... | | |
| 6. | 8 | Jeremy Proctor | 13:09.8 | American (Middle) School i... | | |
| 7. | 8 | Daniel Buckley | 13:12.6 | Yokohama Middle Internatio... | | |
| 8. | 7 | Graham Lorimer | 13:19.8 | Yokohama Middle Internatio... | | |
| 9. | 8 | Jacob Sterry | 13:21.6 | Yokota Middle | | |
| 10. | 8 | Raymond Rodriguez | 13:22.3 | Nishimachi Middle Internat... | | |
| 11. | 8 | Kenny Arao | 13:23.3 | American (Middle) School i... | | |
| 12. | 8 | HeeGun Eom | 13:24.5 | American (Middle) School i... | | |
| 14. | 7 | Tsubasa Kaneko | 13:38.5 | Christian (Middle) Academy... | | |
| 15. | 8 | Ren Phillips | 13:50.9 | St Marys Middle Internatio... | | |
| 16. | 8 | Mikey Baba | 13:52.5 | St Marys Middle Internatio... | | |
| 18. | 8 | Nathan Eckstein | 13:55.5 | American (Middle) School i... | | |
| 19. | 8 | Kento Watanabe | 13:56.4 | St Marys Middle Internatio... | | |
| 20. | 7 | Alistair Kershaw | 14:06.8 | St Marys Middle Internatio... | | |
| 21. | 8 | Charlie Seno | 14:22.4 | American (Middle) School i... | | |
| 22. | 7 | Yoshinobu Soh | 14:22.6 | St Marys Middle Internatio... | | |
| 23. | 8 | Ghi Chong Lew | 14:27.1 | St Marys Middle Internatio... | | |
| 24. | 8 | Isamu Matz | 14:27.1 | Nishimachi Middle Internat... | | |
| 25. | 7 | Terai Koh | 14:29.7 | St Marys Middle Internatio... | | |
| 26. | 6 | Michael Godbout | 14:36.7 | American (Middle) School i... | | |
| 27. | 6 | Brahm Gideon | 14:39.0 | Yokosuka Middle | | |
| 28. | 8 | Harjas Sahni | 14:42.6 | St Marys Middle Internatio... | | |
| 29. | 6 | Michael Deaton | 14:43.9 | American (Middle) School i... | | |
| 30. | 8 | Tadashi Ide | 14:44.6 | Yokohama Middle Internatio... | | |
| 31. | 8 | Fred Gustafsson | 14:53.2 | American (Middle) School i... | | |
| 32. | 7 | Sean Kavanaugh | 14:53.4 | Yokota Middle | | |
| 33. | 7 | Einar Horn | 14:55.7 | American (Middle) School i... | | |
| 35. | 8 | Roland Cote | 15:08.0 | Zama Middle | | |
| 36. | 8 | Jo Tanaka | 15:12.2 | St Maur Middle International | | |
| 37. | 8 | Luca Morellini | 15:14.9 | St Marys Middle Internatio... | | |
| 38. | 7 | Bryan Pfirrmann | 15:16.6 | Yokosuka Middle | | |
| 39. | 7 | GiSung Ho | 15:18.9 | Christian (Middle) Academy... | | |
| 40. | 8 | Ryan Chu | 15:23.2 | St Marys Middle Internatio... | | |
| 41. | 8 | Matthew Mein | 15:23.8 | Nishimachi Middle Internat... | | |
| 42. | 8 | As Da | 15:24.3 | Yokota Middle | | |
| 43. | 8 | Damien Nikalson | 15:35.3 | Yokota Middle | | |
| 44. | 6 | Eito Okino | 15:37.5 | Christian (Middle) Academy... | | |
| 45. | 7 | Ted Callon | 15:38.8 | American (Middle) School i... | | |
| 46. | 7 | Robert Bene | 15:43.7 | American (Middle) School i... | | |
| 47. | 7 | Eric Nakamura Rogan | 15:44.8 | American (Middle) School i... | | |
| 48. | 8 | Ryan Christensen | 15:45.8 | Yokota Middle | | |
| 49. | 6 | Brody Ward | 15:46.8 | American (Middle) School i... | | |
| 50. | 7 | Jean-Luc Neefs | 15:47.6 | St Marys Middle Internatio... | | |
| 51. | 8 | Jake Gach | 15:48.0 | Nishimachi Middle Internat... | | |
| 52. | 7 | Christian Ballet | 15:49.1 | St Marys Middle Internatio... | | |
| 53. | 7 | Taichi Nishiwaki | 15:50.3 | American (Middle) School i... | | |
| 54. | 6 | Brendan Delany | 15:51.7 | Yokohama Middle Internatio... | | |
| 55. | 6 | Ansel Marsh | 16:08.5 | American (Middle) School i... | | |
| 56. | 8 | Noah Swygert | 16:16.4 | Yokota Middle | | |
| 57. | 6 | James McIntyre | 16:18.3 | American (Middle) School i... | | |
| 58. | 6 | Addison Ward | 16:18.7 | American (Middle) School i... | | |
| 59. | 8 | Charlie Xu | 16:23.8 | American (Middle) School i... | | |
| 60. | 7 | Devonte Jackson | 16:28.2 | Yokota Middle | | |
| 61. | 8 | Kevin Schulze | 16:28.7 | St Marys Middle Internatio... | | |
| 62. | 7 | Thomas Spurlock | 16:31.1 | Yokota Middle | | |
| 63. | 7 | Casey Strauss | 16:31.5 | American (Middle) School i... | | |
| 64. | 8 | Doh-Joon Park | 16:32.1 | St Marys Middle Internatio... | | |
| 65. | 7 | Takuya Wakayama | 16:46.3 | American (Middle) School i... | | |
| 66. | 7 | Luca Lor | 16:55.3 | Nishimachi Middle Internat... | | |
| 67. | 6 | Jordon Minner | 16:55.6 | Yokota Middle | | |
| 68. | 7 | Lyle Chen | 17:05.5 | American (Middle) School i... | | |
| 69. | 7 | Shresta Bal | 17:08.9 | Nishimachi Middle Internat... | | |
| 70. | 7 | Taro Nish | 17:10.8 | Nishimachi Middle Internat... | | |
| 71. | 7 | Andrew Ueb | 17:11.3 | Nishimachi Middle Internat... | | |
| 72. | 6 | Alex Beard | 17:13.9 | Yokota Middle | | |
| 73. | 6 | Junya Nakajima | 17:22.1 | Nishimachi Middle Internat... | | |
| 75. | 7 | Tyler Devlin | 17:26.6 | American (Middle) School i... | | |
| 76. | 6 | Ashwat Iyer | 17:29.4 | American (Middle) School i... | | |
| 77. | 8 | Miguell Malacad | 17:33.6 | American (Middle) School i... | | |
| 78. | 6 | Josh Huffine | 17:33.9 | Yokosuka Middle | | |
| 79. | 7 | Josh Vance | 17:36.5 | American (Middle) School i... | | |
| 80. | 8 | Travis Martin | 17:38.3 | Yokosuka Middle | | |
| 81. | 6 | Hanan Bloomer | 17:38.6 | American (Middle) School i... | | |
| 82. | 7 | Leo Ramos | 17:44.7 | Yokosuka Middle | | |
| 83. | 6 | Brooks Wolfe | 17:45.7 | Yokota Middle | | |
| 85. | 7 | Oscar Kiyota | 18:12.0 | Nishimachi Middle Internat... | | |
| 86. | 6 | Taylor Hartsell | 18:17.2 | American (Middle) School i... | | |
| 87. | 8 | Leo Ohyama | 18:31.7 | St Marys Middle Internatio... | | |
| 88. | 7 | Alex Manney | 18:32.0 | Yokota Middle | | |
| 89. | 6 | Jens Bollesen | 18:34.2 | American (Middle) School i... | | |
| 90. | 7 | Jonah Murray | 18:35.1 | American (Middle) School i... | | |
| 91. | 8 | Arthur Remmelink | 18:36.2 | St Marys Middle Internatio... | | |
| 92. | 7 | Sean Barker | 18:38.2 | Yokota Middle | | |
| 93. | 7 | Yasu Murata | 18:43.4 | American (Middle) School i... | | |
| 95. | 8 | Michael Mariuzza | 18:48.5 | Yokota Middle | | |
| 96. | 8 | Taiga Nielsen | 18:52.4 | American (Middle) School i... | | |
| 97. | 6 | Austin Lacroix | 18:52.8 | Yokota Middle | | |
| 98. | 7 | Joel Blanke | 18:55.5 | American (Middle) School i... | | |
| 99. | 7 | Ellis Guo | 18:55.9 | American (Middle) School i... | | |
| 100. | 7 | Kai Chien | 18:58.4 | St Marys Middle Internatio... | | |
| 101. | 7 | Alan Malamud | 19:01.0 | American (Middle) School i... | | |
| 102. | 7 | Sean Ward | 19:07.8 | St Marys Middle Internatio... | | |
| 104. | 8 | Pritum Bhattarai | 19:50.1 | St Marys Middle Internatio... | | |
| 105. | 6 | Chiaro Sanekoto | 20:00.0 | American (Middle) School i... | | |
| 106. | 6 | Ethan Adams | 20:01.0 | American (Middle) School i... | | |
| 107. | 6 | Dean Kaplan | 20:01.4 | American (Middle) School i... | | |
| 108. | 6 | Joseph Brown | 20:24.6 | Yokohama Middle Internatio... | | |
| 109. | 7 | Ryan Ogier | 20:27.3 | American (Middle) School i... | | |
