| 1. | So | | Eric Avila | 8:30.70a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 2. | So | | Brad Liston | 8:37.19a | OH | Shawnee State | Coastal Carolina University Invitational | Sat, Mar 10 |
| 3. | Jr | | Ricky Avila | 8:39.84a | CA | Concordia-Irvine | Westmont Sunshine Indoor Open | Sat, Feb 4 |
| 4. | Sr | | James Johnstone | 8:41.81a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 5. | Jr | | Brett Hornig | 8:44.62a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 6. | So | | Grant Gunneson | 8:45.79a | MI | Aquinas | Lyle Bennett Open | Sat, Apr 28 |
| 7. | Jr | | Sergio Rodriguez | 8:45.82a | CA | Cal Baptist | Rossi Relays | Sat, Feb 25 |
| 8. | Sr | | Dustin Heiler | 8:46.21a | MI | Aquinas | Lyle Bennett Open | Sat, Apr 28 |
| 9. | Fr | | Eric Ghelfi | 8:46.69a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 10. | So | | Ian Burgess | 8:47.46a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 11. | Jr | | Daniel Lyon | 8:47.48a | CA | CS San Marcos | San Diego Collegiate Challenge | Sat, Mar 10 |
| 12. | Sr | | Armando Lara | 8:49.26a | CA | CS San Marcos | San Diego Collegiate Challenge | Sat, Mar 10 |
| 13. | Sr | | Mike Gravelyn | 8:49.29a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 14. | So | | Scott Minor | 8:49.90a | OR | Oregon Tech | Border Battle | Sat, Feb 25 |
| 15. | So | | Brendon Molony | 8:50.97a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 16. | Fr | | Tyler VanDyke | 8:51.41a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 17. | So | | David Sherman | 8:52.41a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 18. | Fr | | Mathew Kring | 8:52.43a | MI | Aquinas | Lyle Bennett Open | Sat, Apr 28 |
| 19. | So | | Dan Foley | 8:53.57a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 20. | Fr | | Trevor Henson | 8:54.80a | CA | Cal Baptist | Rossi Relays | Sat, Feb 25 |
| 21. | Fr | | Anthony Girolamo | 8:55.42a | CA | CS San Marcos | Rossi Relays | Sat, Feb 25 |
| 22. | So | | Ismael Rodriguez | 8:56.44a | CA | CS San Marcos | San Diego Collegiate Challenge | Sat, Mar 10 |
| 23. | So | | Geoff Albaugh | 8:56.46a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 24. | Jr | | James Janisse | 8:58.10a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 25. | Jr | | Darryll Patrick | 8:58.70 | KY | Berea | Billy Hayes Invitational | Fri, May 4 |
| 26. | Fr | | Easton Tackett | 8:59.68a | CA | CS San Marcos | San Diego Collegiate Challenge | Sat, Mar 10 |
| 27. | Jr | | Deng Akuien | 9:02.91a | CA | CS San Marcos | San Diego Collegiate Challenge | Sat, Mar 10 |
| 28. | Fr | | Blake Bitner | 9:02.93a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 29. | Sr | | Javier Madrid | 9:03.14a | CA | Cal Baptist | Rossi Relays | Sat, Feb 25 |
| So | | Thomas Bambach | 9:03.14a | MI | Cornerstone | Grand Rapids Open | Sat, Mar 31 |
| 31. | So | | Adam Schroeder | 9:03.15a | OH | Shawnee State | Coastal Carolina University Invitational | Sat, Mar 10 |
| 32. | So | | Stephen Glinski | 9:03.63a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 33. | So | | Ryan Jensen | 9:04.58a | CA | CS San Marcos | San Diego Collegiate Challenge | Sat, Mar 10 |
| 34. | Sr | | Matt Johnson | 9:05.04a | CA | Vanguard | Rossi Relays | Sat, Feb 25 |
| 35. | Fr | | Austin Barr | 9:05.49a | CA | Vanguard | Rossi Relays | Sat, Feb 25 |
| 36. | So | | Trevor Lynn | 9:07.43a | OR | Southern Oregon University | Pacific Northwest Relays | Fri, Apr 6 |
| 37. | So | | Brandon Scott | 9:08.52a | FL | Webber International | Embry-Riddle Challenge | Sat, Jan 28 |
| 38. | Sr | | Eli Gerlach | 9:08.65a | OH | Shawnee State | Coastal Carolina University Invitational | Sat, Mar 10 |
| 39. | So | | Tarrance Oconnor | 9:08.70 | KY | Berea | Billy Hayes Invitational | Fri, May 4 |
| 40. | Fr | | Henry Hall | 9:08.82a | OR | Southern Oregon University | Pacific Northwest Relays | Fri, Apr 6 |
| 41. | - | | Cody Carter | 9:09.17a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 42. | So | | Kyle Russell | 9:11.14a | CA | Point Loma Nazarene | San Diego Collegiate Challenge | Sat, Mar 10 |
| 43. | Jr | | Kevin Mahar | 9:11.16a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 44. | Jr | | Nate Avelos | 9:12.66a | CA | CS San Marcos | Rossi Relays | Sat, Feb 25 |
| 45. | Jr | | John Trimble | 9:13.31a | OR | Corban | Pacific Northwest Relays | Fri, Apr 6 |
| 46. | Sr | | Andrew Libs | 9:15.11a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 47. | Fr | | John Weber | 9:15.13a | OR | Corban | Pacific Northwest Relays | Fri, Apr 6 |
| 48. | So | | Kirby Garlitz | 9:15.24a | OR | Oregon Tech | Border Battle | Sat, Feb 25 |
| 49. | Sr | | Chad McCarty | 9:15.56a | OH | Rio Grande | Coastal Carolina University Invitational | Sat, Mar 10 |
| 50. | Fr | | Brad Perschbacher | 9:17.92a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 51. | Jr | | Josh Guerrero | 9:18.03a | FL | Embry-Riddle | Embry-Riddle Challenge | Sat, Jan 28 |
| 52. | Jr | | Ed Seymour | 9:18.23a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 53. | So | | Jacob Roth | 9:19.45a | CA | Point Loma Nazarene | Rossi Relays | Sat, Feb 25 |
| 54. | Sr | | Tommy Reeves | 9:20.57a | SC | South Carolina-Beaufort | Embry-Riddle Challenge | Sat, Jan 28 |
| 55. | So | | Dylan Paulk | 9:23.00a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 56. | - | | Tyler Coley | 9:23.41a | CA | Vanguard | Rossi Relays | Sat, Feb 25 |
| 57. | Sr | | Alex Tenelshof | 9:23.43a | MI | Davenport | Lyle Bennett Open | Sat, Apr 28 |
| 58. | So | | Dylan Poorboy | 9:24.21a | CA | Point Loma Nazarene | Rossi Relays | Sat, Feb 25 |
| 59. | So | | Will Parke-Hoffman | 9:25.31a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 60. | Sr | | Ethan Jonker | 9:25.35a | MI | Davenport | Lyle Bennett Open | Sat, Apr 28 |
| 61. | Fr | | Tristan Oliver-Mallory | 9:26.47a | CA | Point Loma Nazarene | San Diego Collegiate Challenge | Sat, Mar 10 |
| 62. | - | | Dylan Roberts | 9:26.96a | FL | Embry-Riddle | Embry-Riddle Last Chance | Sat, Feb 18 |
| 63. | - | | Tyler Nack | 9:28.32a | SD | South Dakota Mines & Tech | Tom Benich Classic 2012 | Fri, Mar 16 |
| 64. | Fr | | Alex Martinez | 9:29.51a | MI | Aquinas | Grand Rapids Open | Sat, Mar 31 |
| 65. | So | | Dusty Prescott | 9:30.24a | MI | Davenport | Lyle Bennett Open | Sat, Apr 28 |
| 66. | - | | Brett Bilitz | 9:30.43a | SD | South Dakota Mines & Tech | Tom Benich Classic 2012 | Fri, Mar 16 |
| 67. | - | | Jason Riggs | 9:33.25a | FL | Embry-Riddle | Embry-Riddle Last Chance | Sat, Feb 18 |
| 68. | So | | Jack Rogan | 9:33.50a | CA | Westmont | Rossi Relays | Sat, Feb 25 |
| 69. | Jr | | Christopher Meeker | 9:38.27a | OR | Warner Pacific | Pacific Northwest Relays | Fri, Apr 6 |
| 70. | So | | Joe Stewart | 9:39.49a | OH | Shawnee State | Coastal Carolina University Invitational | Sat, Mar 10 |
| 71. | Fr | | Tyler Wilson | 9:40.29a | CA | Point Loma Nazarene | San Diego Collegiate Challenge | Sat, Mar 10 |
| 72. | Fr | | Ryan McKendry | 9:41.31a | CA | Concordia-Irvine | Rossi Relays | Sat, Feb 25 |
| 73. | Sr | | Joey Snellink | 9:41.43a | MI | Davenport | Grand Rapids Open | Sat, Mar 31 |
| 74. | Fr | | Robert Robertson | 9:41.84a | OR | Warner Pacific | Pacific Northwest Relays | Fri, Apr 6 |
| 75. | - | | Travis Buse | 9:44.98a | SD | South Dakota Mines & Tech | Tom Benich Classic 2012 | Fri, Mar 16 |
| 76. | So | | Justin Jakubauskas | 9:46.02a | OR | Southern Oregon University | Pacific Northwest Relays | Fri, Apr 6 |
| 77. | - | | Cole Jolovich | 9:50.44a | SD | South Dakota Mines & Tech | Tom Benich Classic 2012 | Fri, Mar 16 |
| 78. | So | | James Hull | 9:50.87a | OR | Oregon Tech | Lane Preview | Sat, Mar 10 |
| 79. | Jr | | Gerald Davis | 9:58.11a | OR | Oregon Tech | Lane Preview | Sat, Mar 10 |
| 80. | So | | Michael Darling | 10:01.14a | MI | Cornerstone | Grand Rapids Open | Sat, Mar 31 |
| 81. | Jr | | Corbyn Jahn | 10:05.42a | OR | Oregon Tech | Lane Preview | Sat, Mar 10 |
| 82. | - | | Robert Rhodus | 10:14.86a | SC | South Carolina-Beaufort | Embry-Riddle Challenge | Sat, Jan 28 |
| 83. | - | | Luke Stevenson | 10:14.94a | SD | South Dakota Mines & Tech | Tom Benich Classic 2012 | Fri, Mar 16 |
| 84. | - | | Max Crowell | 10:15.35a | OR | Southern Oregon University | Border Battle | Sat, Feb 25 |
| 85. | Fr | | Bryan Wardwell | 10:24.28a | OR | Oregon Tech | Border Battle | Sat, Feb 25 |
| 86. | Sr | | Matt Pike | 10:25.32a | SD | South Dakota Mines & Tech | Tom Benich Classic 2012 | Fri, Mar 16 |
| 87. | - | | Charles Biberg | 10:39.27a | SD | South Dakota Mines & Tech | Tom Benich Classic 2012 | Fri, Mar 16 |
| 88. | Fr | | Dante Westwood | 11:11.80a | FL | Webber International | Embry-Riddle Challenge | Sat, Jan 28 |
| 89. | So | | Cameron Harvey | 11:41.01a | FL | Johnson & Wales (FL) | Embry-Riddle Challenge | Sat, Jan 28 |