| 1. | 12 | | William Chen | 4:21.93a | CA | LOWELL | 2012 Viking Track Classic | Sat, Apr 28 |
| 2. | 11 | | Maxwell Niehaus | 4:28.34a | CA | LOWELL | CIF San Francisco Section Finals | Sat, May 26 |
| 3. | 10 | | Brian Nguyen | 4:37.48a | CA | LOWELL | K-Bell Invitational | Sat, Mar 10 |
| 4. | 11 | | Jeremie Showa | 4:39.26a | CA | MISSION | CIF San Francisco Section Finals | Sat, May 26 |
| 5. | 10 | | Donald Chen | 4:40.00a | CA | LOWELL | 2012 Viking Track Classic | Sat, Apr 28 |
| 6. | 9 | | Abdul Mohamed | 4:47.76a | CA | MISSION | CIF San Francisco Section Finals | Sat, May 26 |
| 7. | 11 | | Max Niehaus | 4:49.76a | CA | LOWELL | CIF State Meet Qualifying | Fri, Jun 1 |
| 8. | 11 | | Chris Chow | 4:50.12a | CA | LOWELL | K-Bell Invitational | Sat, Mar 10 |
| 9. | 11 | | Patrick Anzueto | 4:53.14a | CA | George WASHINGTON | San Mateo Bearcat Invite | Sat, Apr 21 |
| 10. | 11 | | Steven Chan | 4:53.44a | CA | GALILEO Academy of Science & Technology | CIF San Francisco Section Finals | Sat, May 26 |
| 11. | 11 | | Daniel Gray | 4:55.99a | CA | Abraham Lincoln | K-Bell Invitational | Sat, Mar 10 |
| 12. | 11 | | Emad Haidar | 4:56.08a | CA | International Studies Academy (I.S.A.) | Skyline Invitational | Sat, Mar 3 |
| 13. | 10 | | CALVIN LI | 4:56.62a | CA | LOWELL | CIF San Francisco Section Finals | Sat, May 26 |
| 14. | 12 | | Darwin Mayhew | 4:56.71a | CA | George WASHINGTON | Don Bell "QuickSilver Classic" | Sat, Apr 7 |
| 15. | 10 | | Johnathan Xie | 4:57.19a | CA | Abraham Lincoln | CIF San Francisco Section Finals | Sat, May 26 |
| 16. | 11 | | David Wu | 4:57.51a | CA | GALILEO Academy of Science & Technology | CIF San Francisco Section Finals | Sat, May 26 |
| 17. | 11 | | Raymond Lang | 5:00.40a | CA | LOWELL | CIF San Francisco Section Finals | Sat, May 26 |
| 18. | 9 | | Jack Hinson | 5:02.81a | CA | LOWELL | CIF San Francisco Section Finals | Sat, May 26 |
| 19. | 10 | | ALVIN TAN | 5:02.97a | CA | GALILEO Academy of Science & Technology | CIF San Francisco Section Trials | Sat, May 19 |
| 20. | 10 | | Samuel Ryan | 5:06.88a | CA | LOWELL | K-Bell Invitational | Sat, Mar 10 |
| 21. | 12 | | Eddy Zheng | 5:07.23a | CA | LOWELL | 2012 Viking Track Classic | Sat, Apr 28 |
| 22. | 12 | | Alex Skevos | 5:07.93a | CA | George WASHINGTON | 2012 Viking Track Classic | Sat, Apr 28 |
| 23. | 9 | | Ryota Aizawa | 5:09.91a | CA | Abraham Lincoln | CIF San Francisco Section Trials | Sat, May 19 |
| 24. | 12 | | Aaron Wang | 5:10.45a | CA | Abraham Lincoln | K-Bell Invitational | Sat, Mar 10 |
| 25. | 9 | | Jhonathan Romero | 5:10.92a | CA | GALILEO Academy of Science & Technology | CIF San Francisco Section Trials | Sat, May 19 |
| 26. | 9 | | Jason Hoang | 5:12.74a | CA | GALILEO Academy of Science & Technology | CIF San Francisco Section Trials | Sat, May 19 |
| 27. | 11 | | Israel Alemu | 5:13.14a | CA | International Studies Academy (I.S.A.) | Skyline Invitational | Sat, Mar 3 |
| 28. | 9 | | David Tang | 5:14.44a | CA | George WASHINGTON | 2012 Viking Track Classic | Sat, Apr 28 |
| 29. | 12 | | Hai (Devin) Hu | 5:14.85a | CA | Abraham Lincoln | K-Bell Invitational | Sat, Mar 10 |
| 30. | 9 | | Chris Lee | 5:16.48a | CA | Phillip & Sala BURTON | CIF San Francisco Section Trials | Sat, May 19 |
| 31. | 10 | | Raymond Quintela | 5:19.14a | CA | George WASHINGTON | CIF San Francisco Section Trials | Sat, May 19 |
| 32. | 10 | | Ahmed Al Mahbashi | 5:19.79a | CA | MISSION | CIF San Francisco Section Trials | Sat, May 19 |
| 33. | 9 | | Miles Gong | 5:20.21a | CA | Abraham Lincoln | CIF San Francisco Section Trials | Sat, May 19 |
| 34. | 9 | | Dylan Tang | 5:21.87a | CA | Abraham Lincoln | CIF San Francisco Section Trials | Sat, May 19 |
| 35. | 10 | | Kenny Lee | 5:22.35a | CA | International Studies Academy (I.S.A.) | CIF San Francisco Section Trials | Sat, May 19 |
| 36. | 12 | | Steven Wong | 5:22.61a | CA | George WASHINGTON | Don Bell "QuickSilver Classic" | Sat, Apr 7 |
| 37. | 12 | | GARVIN LIN | 5:23.10a | CA | George WASHINGTON | CIF San Francisco Section Finals | Sat, May 26 |
| 38. | 9 | | Benji Guy Yoche | 5:23.40a | CA | Phillip & Sala BURTON | CIF San Francisco Section Trials | Sat, May 19 |
| 39. | 10 | | Henry Hammel | 5:29.32a | CA | LOWELL | San Mateo Bearcat Invite | Sat, Apr 21 |
| 40. | 11 | | KENDALL LUI | 5:34.95a | CA | BALBOA | Big Cats Relays | Sat, Mar 17 |
| 41. | 9 | | Jonathan Blanco | 5:36.77a | CA | GALILEO Academy of Science & Technology | CIF San Francisco Section Trials | Sat, May 19 |
| 42. | 11 | | Darwin Valasquez | 5:39.16a | CA | George WASHINGTON | San Mateo Bearcat Invite | Sat, Apr 21 |
| 43. | 9 | | Gyu Hwang | 5:44.40a | CA | George WASHINGTON | CIF San Francisco Section Trials | Sat, May 19 |
| 44. | 9 | | Vicente Torres | 5:48.98a | CA | George WASHINGTON | CIF San Francisco Section Trials | Sat, May 19 |
| 45. | - | | Victor Yu | 5:57.31a | CA | Phillip & Sala BURTON | Big Cats Relays | Sat, Mar 17 |
| 46. | 9 | | Alden Wong | 5:58.54a | CA | Phillip & Sala BURTON | CIF San Francisco Section Trials | Sat, May 19 |
| 47. | - | | Alex Yu | 6:00.64a | CA | Phillip & Sala BURTON | Big Cats Relays | Sat, Mar 17 |